DNA Binding Motif

						

			
Accessions: 1nk3_P (3D-footprint 20231221)

			
Names: HOMEOBOX PROTEIN VND
Organisms: Drosophila melanogaster
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: VND/NK-2 HOMEODOMAIN/DNA COMPLEX, NMR, MINIMIZED AVERAGE STRUCTURE
Length: 8
Consensus: CAnTTGaC
Weblogo: 
PSSM: P0      A      C      G      T
01      4     82      6      4      C
02     69      4     19      4      A
03     24     24     24     24      n
04      6      4      4     82      T
05      0      0      0     96      T
06      0      0     96      0      G
07     56     15     17      8      a
08      4     84      4      4      C
Binding TFs: 1nk3_P (Homeobox domain)
Binding Sites: 1nk3_A
1nk3_B
			
Publications: Gruschus J.M, Tsao D.H, Wang L.H, Nirenberg M, Ferretti J.A. Interactions of the vnd/NK-2 homeodomain with DNA by nuclear magnetic resonance spectroscopy: basis of binding specificity. Biochemistry 36:5372-80 (1997). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.