DNA Binding Motif
| Accessions: | UP00053A_2 (UniPROBE 20160601) |
| Names: | 9530071D11Rik, Nr2b1, Retinoic acid receptor RXR-alpha, retinoid X receptor alpha, RXR alpha 1, Rxra, RXRalpha1 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 16 |
| Consensus: | kcrcrwAGktyrtwmk |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.13 0.10 0.36 0.40 k 02 0.22 0.52 0.19 0.08 c 03 0.31 0.16 0.38 0.14 r 04 0.20 0.51 0.14 0.16 c 05 0.40 0.06 0.49 0.05 r 06 0.47 0.06 0.01 0.46 w 07 0.77 0.06 0.01 0.16 A 08 0.15 0.04 0.76 0.06 G 09 0.05 0.06 0.53 0.36 k 10 0.07 0.10 0.19 0.64 t 11 0.10 0.32 0.14 0.44 y 12 0.40 0.07 0.47 0.05 r 13 0.21 0.24 0.21 0.34 t 14 0.35 0.16 0.21 0.29 w 15 0.28 0.36 0.16 0.20 m 16 0.22 0.18 0.29 0.31 k |
| Binding TFs: | UP00053A (Zinc finger, C4 type (two domains)) |
| Binding Sites: | AAGGTCAC AAGGTCAT AATGACCT AGAGGTCA AGGGGTCA AGGGTCAA AGGTCAAG AGGTCACC AGGTCATC ATGACCCC CAAGGTCA CGAGGTCA CGGGGTCA CTGACCCC GAGGTCAA GAGGTCAC GATGACCC GGGGTCAA GGGGTCAC TGACCCCA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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