DNA Binding Motif

						

			
Accessions: MA1860.1 (JASPAR 2024)

			
Names: FoxA-b
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 22
Consensus: wwdwdyaAATATTTrywywwww
Weblogo: 
PSSM: P0      A      C      G      T
01    263    192    232    312      w
02    290    164    183    363      w
03    292    188    260    260      d
04    293    179    231    297      w
05    251    157    339    253      d
06    174    300    139    386      y
07    421    209    141    228      a
08    760     60     65    115      A
09    763     57     70    111      A
10     25     55     18    902      T
11    814     25    132     29      A
12     45     27     29    899      T
13     41     25     48    885      T
14     70     28    109    794      T
15    267     28    650     55      r
16    179    369    135    317      y
17    278    202    195    325      w
18    213    257    180    350      y
19    395    125    179    302      w
20    278    219    241    262      w
21    266    235    200    299      w
22    310    215    210    266      w
Type: Heterodimer
Binding TFs: Q4H3J5 (Fork head domain)
Q4H3J5
			
Publications: José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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