DNA Binding Motif
| Accessions: | UP00574A_2 (UniPROBE 20160601) |
| Names: | ACTIVATED BY AP3/PI, ANAC029, Arabidopsis NAC domain containing protein 29, ARABIDOPSIS NAC DOMAIN PROTEIN 029, At1g69490, ATNAP, F10D13_14, F10D13.14, NAC domain-containing protein 29, NAC transcription factor protein family, NAC-LIKE, NAP, Protein NAC-LIKE |
| Organisms: | Arabidopsis thaliana |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 13 |
| Consensus: | mwayACGCAAcyk |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.39 0.31 0.18 0.12 m 02 0.37 0.10 0.08 0.45 w 03 0.60 0.08 0.18 0.14 a 04 0.02 0.63 0.05 0.29 y 05 0.94 0.03 0.02 0.01 A 06 0.01 0.98 0.01 0.01 C 07 0.03 0.01 0.95 0.01 G 08 0.04 0.70 0.08 0.18 C 09 0.95 0.03 0.01 0.01 A 10 0.91 0.01 0.01 0.08 A 11 0.06 0.64 0.09 0.21 c 12 0.07 0.37 0.06 0.50 y 13 0.05 0.08 0.25 0.62 k |
| Binding TFs: | UP00574A (No apical meristem (NAM) protein) |
| Binding Sites: | ACGTAATC ATACGTAA ATTACGTA CACGGCAC GTTACGTA TTACGTAA ACACGCAA ACACGTAA ACACGTCA ACGCAACC ACGCAACT ACGCAATC ACGTAACT AGACGTAA ATACGCAA CACGCAAC CACGTAAC GATACGTA GTTCCGTA GTTGCGTA |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
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