DNA Binding Motif

						

			
Accessions: MA1672.1 (JASPAR 2024)

			
Names: GBF2
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 13
Consensus: rhsACGTGGCAww
Weblogo: 
PSSM: P0      A      C      G      T
01   2246   1574   2262   1840      r
02   2324   2084    679   2835      h
03    560   2988   3420    954      s
04   7479    101    145    197      A
05    223   7122    221    356      C
06    319    107   7275    221      G
07    227    127     77   7491      T
08    174     83   7553    112      G
09    333    153   6028   1408      G
10   1027   6254    282    359      C
11   5558    596    891    877      A
12   2457   1420   1653   2392      w
13   2559   1516   1488   2359      w
Type: Heterodimer
Binding TFs: P42775 (bZIP transcription factor, Basic region leucine zipper, G-box binding protein MFMR)
P42775
Binding Sites: MA1672.1.1
MA1672.1.10 / MA1672.1.8
MA1672.1.11 / MA1672.1.9
MA1672.1.12
MA1672.1.10 / MA1672.1.13
MA1672.1.11 / MA1672.1.14
MA1672.1.13 / MA1672.1.15
MA1672.1.14 / MA1672.1.16
MA1672.1.16 / MA1672.1.17
MA1672.1.17 / MA1672.1.18
MA1672.1.18 / MA1672.1.19
MA1672.1.2
MA1672.1.20
MA1672.1.3
MA1672.1.4
MA1672.1.5
MA1672.1.4 / MA1672.1.6
MA1672.1.7
MA1672.1.6 / MA1672.1.8
MA1672.1.7 / MA1672.1.9
MA1672.1.12
MA1672.1.15
MA1672.1.19
MA1672.1.20
MA1672.1.3
MA1672.1.5
			
Publications: Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.