DNA Binding Motif
| Accessions: | UP00076A_2 (UniPROBE 20160601) |
| Names: | 2510005N23Rik, 9930116O05Rik, D130086K05Rik, regulatory factor X domain containing 2 homolog (human), Rfxdc2 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 17 |
| Consensus: | skrctTrGWkACsgwww |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.12 0.37 0.28 0.23 s 02 0.15 0.18 0.32 0.35 k 03 0.43 0.21 0.27 0.09 r 04 0.07 0.67 0.17 0.10 c 05 0.21 0.15 0.23 0.40 t 06 0.04 0.19 0.03 0.73 T 07 0.36 0.04 0.59 0.01 r 08 0.02 0.02 0.95 0.02 G 09 0.70 0.01 0.01 0.28 W 10 0.02 0.02 0.37 0.59 k 11 0.95 0.01 0.02 0.02 A 12 0.02 0.95 0.01 0.03 C 13 0.11 0.33 0.51 0.04 s 14 0.22 0.25 0.40 0.14 g 15 0.31 0.18 0.25 0.27 w 16 0.48 0.13 0.13 0.26 w 17 0.32 0.23 0.11 0.34 w |
| Binding TFs: | UP00076A (RFX DNA-binding domain, Poxvirus D5 protein-like) |
| Binding Sites: | ACAGCAAC AGCAACCG ATAGCAAC ATGGCAAC ATGGTAAC CAGCAACC CAGCAACG CCAGCAAC CGTTACCA CGTTACTA CGTTGCCA CGTTGCTA CTAGCAAC GGCAACCA GGTTACCA GGTTGCCA GGTTGCTA GTAGCAAC GTTGCTAA TAGCAACA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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