DNA Binding Motif

						

			
Accessions: MA2455.1 (JASPAR 2024)

			
Names: SPL9D
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 14
Consensus: aGCGGTAsTACCGc
Weblogo: 
PSSM: P0      A      C      G      T
01  60865  13545  10878   9067      a
02   7202   6434  78721   1998      G
03   3000  78886   1975  10494      C
04  10770   2122  77294   4169      G
05   2543   1501  87346   2965      G
06   2762   4217    841  86535      T
07  88413    618   1654   3670      A
08    608  33855  59339    553      s
09   2831   1541    509  89474      T
10  88871    664   3167   1653      A
11   1986  86329   3540   2500      C
12   5158  71923   4828  12446      C
13  13924   3232  73747   3452      G
14   6632  63651  12081  11991      c
Binding Sites: MA2455.1.1
MA2455.1.10
MA2455.1.11 / MA2455.1.14
MA2455.1.12
MA2455.1.13
MA2455.1.15
MA2455.1.16
MA2455.1.17
MA2455.1.18
MA2455.1.19
MA2455.1.2
MA2455.1.20
MA2455.1.3
MA2455.1.4
MA2455.1.5
MA2455.1.6
MA2455.1.7
MA2455.1.8
MA2455.1.9
			
Publications: Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.