DNA Binding Motif

						

			
Accessions: M0086 (AthalianaCistrome v4_May2016)

			
Names: RAP21.ampDAP, T03064;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 20
Consensus: ycdyCACCGACAwhdccayy
Weblogo: 
PSSM: P0      A      C      G      T
01    130    194     83    175      y
02    126    260     61    135      c
03    152     70    175    185      d
04     64    259     87    172      y
05     29    526      8     19      C
06    439      0    143      0      A
07      0    582      0      0      C
08      0    582      0      0      C
09      0      0    582      0      G
10    455     92      1     34      A
11      0    582      0      0      C
12    403     81     54     44      A
13    192    123     36    231      w
14    167    156     72    187      h
15    170     63    160    189      d
16    145    198     96    143      c
17    126    237     88    131      c
18    171    141    137    133      a
19    137    186     86    173      y
20    119    212     90    161      y
Binding TFs: T03064 (AP2 domain)
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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