DNA Binding Motif

						

			
Accessions: UP00458A_1 (UniPROBE 20160601), UP00458A_2 (UniPROBE 20160601)

			
Names: CYP1, Hap1, Heme Activator Protein
Organisms: Saccharomyces cerevisiae
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 23
Consensus: scrwycyCGGAGwTAAcgccsky
Weblogo: 
PSSM: P0      A      C      G      T
01   0.17   0.43   0.26   0.14      s
02   0.16   0.51   0.22   0.12      c
03   0.30   0.15   0.34   0.20      r
04   0.42   0.16   0.17   0.25      w
05   0.08   0.33   0.18   0.41      y
06   0.24   0.45   0.13   0.18      c
07   0.07   0.34   0.02   0.57      y
08      0   0.98      0   0.01      C
09      0   0.04   0.95      0      G
10      0      0   0.99      0      G
11   0.94   0.01   0.03   0.01      A
12   0.05   0.15   0.74   0.05      G
13   0.59   0.01   0.01   0.40      w
14   0.02   0.01      0   0.96      T
15   0.95      0   0.01   0.04      A
16   0.85   0.04   0.05   0.05      A
17   0.06   0.63   0.19   0.12      c
18   0.16   0.09   0.65   0.10      g
19   0.14   0.56   0.17   0.12      c
20   0.22   0.41   0.22   0.16      c
21   0.16   0.26   0.36   0.22      s
22   0.09   0.11   0.35   0.46      k
23   0.12   0.26   0.14   0.48      y
Binding TFs: UP00458A
Binding Sites: AACTCCGA
AACTCCGG
AATCTCCG
ATCTCCGA
ATCTCCGG
CGGAAATA
CGGAATTA
CGGACATA
CGGACTTA
CGGAGATA
CGGAGTTA
CGGATATA
CGGATTTA
CGGGGATA
CGGGTTTA
TCGGCCGA
AAATCCGG
CGGCGATA
CGGCGTTA
CGGGGTTA
			
Publications: Gordân R, Murphy KF, McCord RP, Zhu C, Vedenko A, Bulyk ML. Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights. Genome Biol : (2011). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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