DNA Binding Motif

						

			
Accessions: 5jlw_D (3D-footprint 20231221)

			
Names: Homeotic protein antennapedia
Organisms: Drosophila melanogaster
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: AntpHD with 15bp DNA duplex R-monothioated at Cytidine-8
Length: 6
Consensus: CATTAG
Weblogo: 
PSSM: P0      A      C      G      T
01      9     67      9     11      C
02     69      9      9      9      A
03      0      0      0     96      T
04      0      0      0     96      T
05     67      9     11      9      A
06      0      0     96      0      G
Binding TFs: 5jlw_D (Homeobox domain)
Binding Sites: 5jlw_F
5jlw_E
			
Publications: Nguyen D, Zandarashvili L, White MA, Iwahara J. Stereospecific Effects of Oxygen-to-Sulfur Substitution in DNA Phosphate on Ion Pair Dynamics and Protein-DNA Affinity. Chembiochem 17:1636-42 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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