DNA Binding Motif

						

			
Accessions: MA0499.3 (JASPAR 2024)

			
Names: MYOD1
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 9
Consensus: gCACCTGTy
Weblogo: 
PSSM: P0      A      C      G      T
01   4549   5622  21884   2245      g
02    349  33328    354    269      C
03  32281    583    849    587      A
04    463  25275   7336   1226      C
05    534  32504    932    330      C
06    241    563    366  33130      T
07    208    386  33468    238      G
08    402   2555   1699  29644      T
09   1808  19052   4440   9000      y
Type: Heterodimer
Binding TFs: P15172 (Helix-loop-helix DNA-binding domain, Myogenic Basic domain, Myogenic determination factor 5)
P15172
Binding Sites: MA0499.3.17 / MA0499.3.19 / MA0499.3.3
MA0499.3.9
MA0499.3.15 / MA0499.3.16 / MA0499.3.20
MA0499.3.1
MA0499.3.10 / MA0499.3.8
MA0499.3.11
MA0499.3.12
MA0499.3.13
MA0499.3.14
MA0499.3.18
MA0499.3.2 / MA0499.3.6 / MA0499.3.7
MA0499.3.4
MA0499.3.5
			
Publications: Cao Y, Yao Z, Sarkar D, Lawrence M, Sanchez G.J, Parker M.H, MacQuarrie K.L, Davison J, Morgan M.T, Ruzzo W.L, Gentleman R.C, Tapscott S.J. Genome-wide MyoD binding in skeletal muscle cells: a potential for broad cellular reprogramming. Developmental cell 18:662-74 (2010). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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