DNA Binding Motif

						

			
Accessions: MA1733.2 (JASPAR 2024)

			
Names: ASR3
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 9
Consensus: TrCCCTwaa
Weblogo: 
PSSM: P0      A      C      G      T
01    184      0    102    715      T
02    421      0    579      0      r
03     60    810      0    130      C
04      0   1000      0      0      C
05      0    895      0    105      C
06     15    104     10    871      T
07    474     28      0    497      w
08    649    165     32    154      a
09    624     78     78    219      a
Type: Heterodimer
Binding TFs: Q8VZ20 (Myb/SANT-like DNA-binding domain)
Q8VZ20
			
Publications: Kaplan-Levy RN, Brewer PB, Quon T, Smyth DR. The trihelix family of transcription factors--light, stress and development. Trends Plant Sci 17:163-71 (2012). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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