DNA Binding Motif
| Accessions: | MA1249.1 (JASPAR 2024), M0040 (AthalianaCistrome v4_May2016) |
| Names: | RAP210, Rap210.DAP, T24614; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 15 |
| Consensus: | wwkTGTCGGCrrmrr |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 169 140 88 202 w 02 204 67 119 209 w 03 115 104 156 224 k 04 11 98 2 488 T 05 0 0 598 1 G 06 26 0 10 563 T 07 0 599 0 0 C 08 0 0 599 0 G 09 30 0 569 0 G 10 0 454 2 143 C 11 285 34 213 67 r 12 271 46 205 77 r 13 226 154 103 116 m 14 187 82 204 126 r 15 180 77 195 147 r |
| Type: | Heterodimer |
| Binding TFs: | T24614 (AP2 domain) Q9SW63 (AP2 domain) Q9SW63 |
| Binding Sites: | MA1249.1.1 MA1249.1.10 MA1249.1.11 MA1249.1.12 MA1249.1.13 MA1249.1.14 MA1249.1.15 MA1249.1.16 MA1249.1.17 MA1249.1.18 MA1249.1.19 MA1249.1.2 MA1249.1.20 MA1249.1.3 MA1249.1.4 MA1249.1.5 MA1249.1.6 MA1249.1.7 MA1249.1.8 MA1249.1.9 |
| Publications: | Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). [Pubmed] O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.