DNA Binding Motif

						

			
Accessions: MA2435.1 (JASPAR 2024)

			
Names: SPL16D
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 13
Consensus: GCGGTAsTACcGc
Weblogo: 
PSSM: P0      A      C      G      T
01  12602  11250  84068   4021      G
02   3593  95779   1954  10615      C
03  10021   2509  97672   1739      G
04   1875    782 108913    371      G
05   2745   3903    821 104472      T
06 107579    372   1666   2324      A
07    450  57140  53874    477      s
08   2361   1107    986 107487      T
09 104722   1366   3668   2185      A
10  11096  78734  15218   6893      C
11  12859  69336  10013  19733      c
12  20990   7752  76250   6949      G
13  10753  68781  17018  15389      c
Binding Sites: MA2435.1.13 / MA2435.1.20
MA2435.1.12 / MA2435.1.19
MA2435.1.11
MA2435.1.10
MA2435.1.3
MA2435.1.1
MA2435.1.14
MA2435.1.15
MA2435.1.16
MA2435.1.17
MA2435.1.18
MA2435.1.2
MA2435.1.4 / MA2435.1.5 / MA2435.1.7 / MA2435.1.8
MA2435.1.6
MA2435.1.9
			
Publications: Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.