DNA Binding Motif
| Accessions: | MA2408.1 (JASPAR 2024) |
| Names: | BAD1 |
| Organisms: | Zea mays |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 12 |
| Consensus: | CCSGGsCCCsrC |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 85 7412 168 19 C 02 42 7530 62 50 C 03 169 2124 5361 30 S 04 9 783 6871 21 G 05 751 18 6875 40 G 06 502 4866 2150 166 s 07 29 6378 1189 88 C 08 32 7541 64 47 C 09 123 7370 169 22 C 10 1675 3615 2239 155 s 11 3036 1531 2993 124 r 12 229 6068 571 816 C |
| Binding TFs: | B4F7W2 |
| Binding Sites: | MA2408.1.1 MA2408.1.10 MA2408.1.11 MA2408.1.12 MA2408.1.13 / MA2408.1.14 MA2408.1.15 / MA2408.1.16 MA2408.1.17 MA2408.1.18 MA2408.1.19 MA2408.1.2 MA2408.1.20 MA2408.1.3 MA2408.1.4 MA2408.1.5 MA2408.1.6 MA2408.1.7 MA2408.1.8 MA2408.1.9 |
| Publications: | Viola I. L., Uberti Manassero N. G., Ripoll R., Gonzalez D. H. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA binding properties due to the presence of threonine at position 15 of the TCP domain.. Biochem. J. 435:143 (2011). [Pubmed] |
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