DNA Binding Motif

						

			
Accessions: NEUROD1_2 (HT-SELEX2 May2017)

			
Names: NEUROD1
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 19
Consensus: AAwTAssgyrmCATATGky
Weblogo: 
PSSM: P0      A      C      G      T
01    744     94     40    171      A
02    744      8     14     41      A
03    447      1      1    296      w
04     25      7      6    744      T
05    744     36     87    111      A
06    174    225    201    144      s
07    126    262    207    149      s
08    179    107    300    158      g
09     32    380    136    196      y
10    265      5    466      7      r
11    315    350     78      1      m
12      0    744      4      1      C
13    744      2      0      1      A
14      0      0      9    744      T
15    744      8      0      0      A
16      5      2      0    744      T
17      0      0    744      0      G
18      8     91    361    283      k
19      7    451      4    281      y
Binding TFs: NEUROD1 (Helix-loop-helix DNA-binding domain, Neuronal helix-loop-helix transcription factor )
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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