DNA Binding Motif

						

			
Accessions: 5x07_F (3D-footprint 20231221)

			
Names: Hepatocyte nuclear factor 3-beta
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of FOXA2 DNA binding domain bound to a full consensus DNA site
Length: 6
Consensus: TAAACA
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02     96      0      0      0      A
03     96      0      0      0      A
04     67     11      9      9      A
05     11     67      9      9      C
06     67     11      9      9      A
Binding TFs: 5x07_F (Fork head domain)
Binding Sites: 5x07_D
5x07_E
			
Publications: Li J, Dantas Machado AC, Guo M, Sagendorf JM, Zhou Z, Jiang L, Chen X, Wu D, Qu L, Chen Z, Chen L, Rohs R, Chen Y. Structure of the Forkhead Domain of FOXA2 Bound to a Complete DNA Consensus Site. Biochemistry 56:3745-3753 (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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