DNA Binding Motif

						

			
Accessions: MA1864.1 (JASPAR 2024)

			
Names: FoxF
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 20
Consensus: wwwwawaTAAAyAwwyamah
Weblogo: 
PSSM: P0      A      C      G      T
01    316    219    204    261      w
02    289    227    169    315      w
03    361    185    202    252      w
04    299    207    112    382      w
05    446    164    164    226      a
06    385    203    123    290      w
07    527    120    235    118      a
08     39    138     11    812      T
09    934     34     11     21      A
10    912     29     10     49      A
11    957     10     10     24      A
12     14    308      6    672      y
13    951     10     18     21      A
14    464    164     88    285      w
15    484    128    108    280      w
16    224    373    101    302      y
17    541    144    131    184      a
18    310    292    157    240      m
19    359    234    177    230      a
20    291    279    170    259      h
Type: Heterodimer
Binding TFs: Q4H3J0 (Fork head domain)
Q4H3J0
			
Publications: José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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