DNA Binding Motif
Accessions: | 1u8b_A (3D-footprint 20231221) |
Names: | Ada polyprotein |
Organisms: | Escherichia coli, strain K12 |
Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
Description: | Crystal structure of the methylated N-ADA/DNA complex |
Length: | 9 |
Consensus: | AnnntArAT |
Weblogo: | |
PSSM: | P0 A C G T 01 96 0 0 0 A 02 24 24 24 24 n 03 24 24 24 24 n 04 24 24 24 24 n 05 18 18 22 38 t 06 91 1 4 0 A 07 50 0 24 22 r 08 96 0 0 0 A 09 13 0 6 77 T |
Binding TFs: | 1u8b_A (Bacterial regulatory helix-turn-helix proteins, AraC family, Metal binding domain of Ada, Helix-turn-helix domain) |
Binding Sites: | 1u8b_D 1u8b_E |
Publications: | He C, Hus J.C, Sun L.J, Zhou P, Norman D.P, Dötsch V, Wei H, Gross J.D, Lane W.S, Wagner G, Verdine G.L. A methylation-dependent electrostatic switch controls DNA repair and transcriptional activation by E. coli ada. Molecular cell 20:117-29 (2005). [Pubmed] |
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