DNA Binding Motif

						

			
Accessions: 3wgi_CD (3D-footprint 20231221)

			
Names: Redox-sensing transcriptional repressor rex
Organisms: Thermoanaerobacter ethanolicus JW 200
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of RSP in complex with beta-NAD+ and operator DNA
Length: 18
Consensus: TTGTTAAnnnnTTAACAA
Weblogo: 
PSSM: P0      A      C      G      T
01      4      6      4     82      T
02      0      0      0     96      T
03      0      0     96      0      G
04      4      4      4     84      T
05      4      4      6     82      T
06     96      0      0      0      A
07     82      6      4      4      A
08     24     24     24     24      n
09     24     24     24     24      n
10     24     24     24     24      n
11     24     24     24     24      n
12      4      4      6     82      T
13      0      0      0     96      T
14     82      6      4      4      A
15     96      0      0      0      A
16      0     96      0      0      C
17     96      0      0      0      A
18     82      4      6      4      A
Binding TFs: 3wgi_C / 3wgi_D (CoA binding domain, Putative DNA-binding protein N-terminus)
Binding Sites: 3wgi_G / 3wgi_H
			
Publications: Zheng Y, Ko TP, Sun H, Huang CH, Pei J, Qiu R, Wang AH, Wiegel J, Shao W, Guo RT. Distinct structural features of Rex-family repressors to sense redox levels in anaerobes and aerobes. J Struct Biol 188:195-204 (2014). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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