DNA Binding Motif

						

			
Accessions: 6jbq_F (3D-footprint 20231221)

			
Names: ECF RNA polymerase sigma-E factor
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CryoEM structure of Escherichia coli sigmaE transcription initiation complex containing 5nt of RNA
Length: 31
Consensus: CGGAACTnnnnnnnnnnnnnAnTGTCnnAnC
Weblogo: 
PSSM: P0      A      C      G      T
01      0     96      0      0      C
02      7      4     81      4      G
03      4      4     84      4      G
04     96      0      0      0      A
05     96      0      0      0      A
06      0     92      0      4      C
07      4      4      7     81      T
08     24     24     24     24      n
09     24     24     24     24      n
10     24     24     24     24      n
11     24     24     24     24      n
12     24     24     24     24      n
13     24     24     24     24      n
14     24     24     24     24      n
15     24     24     24     24      n
16     24     24     24     24      n
17     24     24     24     24      n
18     24     24     24     24      n
19     24     24     24     24      n
20     24     24     24     24      n
21     81      4      4      7      A
22     24     24     24     24      n
23      4      4      7     81      T
24      0      0     96      0      G
25      0      0      0     96      T
26      0     96      0      0      C
27     24     24     24     24      n
28     24     24     24     24      n
29     96      0      0      0      A
30     24     24     24     24      n
31      4     84      4      4      C
Binding TFs: 6jbq_F (Sigma-70 region 2 , Sigma-70, region 4, ECF sigma factor, Sigma-70, region 4)
Binding Sites: 6jbq_G
6jbq_H
			
Publications: Fang C, Li L, Shen L, Shi J, Wang S, Feng Y, Zhang Y. Structures and mechanism of transcription initiation by bacterial ECF factors. Nucleic Acids Res 47:7094-7104 (2019). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.