DNA Binding Motif

						

			
Accessions: MA1676.1 (JASPAR 2024)

			
Names: NAC062
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 24
Consensus: wwTTcCTTAathwtTAAGtAAhhw
Weblogo: 
PSSM: P0      A      C      G      T
01    216     94    166    230      w
02    215    105    150    236      w
03    108     24     21    553      T
04    112     20     46    528      T
05    167    302     86    151      c
06      8    694      1      3      C
07      1      2      5    698      T
08      2      1      0    703      T
09    495    102     86     23      A
10    386     97     92    131      a
11    170    170    142    224      t
12    195    182    140    189      h
13    240    150    139    177      w
14    132     89    106    379      t
15     21     78     76    531      T
16    700      2      0      4      A
17    702      0      0      4      A
18      1      2    696      7      G
19    141     73     67    425      t
20    541     45     13    107      A
21    565     17     16    108      A
22    177    267     61    201      h
23    192    185     90    239      h
24    243    102    126    235      w
Type: Heterodimer
Binding TFs: Q9SCK6 (No apical meristem (NAM) protein)
Q9SCK6
Binding Sites: MA1676.1.1
MA1676.1.10
MA1676.1.11
MA1676.1.12
MA1676.1.13
MA1676.1.14
MA1676.1.15
MA1676.1.16
MA1676.1.17
MA1676.1.18
MA1676.1.19
MA1676.1.2
MA1676.1.20
MA1676.1.3
MA1676.1.4
MA1676.1.5
MA1676.1.6
MA1676.1.7
MA1676.1.8
MA1676.1.9
			
Publications: Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.