DNA Binding Motif

						

			
Accessions: 1by4_BC (3D-footprint 20231221)

			
Names: PROTEIN (RETINOIC ACID RECEPTOR RXR-ALPHA)
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: STRUCTURE AND MECHANISM OF THE HOMODIMERIC ASSEMBLY OF THE RXR ON DNA
Length: 13
Consensus: GGTCAnnnGGTCA
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0     96      0      G
02      0      0     96      0      G
03      9      9      9     69      T
04      0     96      0      0      C
05     67      9      9     11      A
06     24     24     24     24      n
07     24     24     24     24      n
08     24     24     24     24      n
09      0      0     96      0      G
10      0      0     96      0      G
11      0      0      0     96      T
12      0     96      0      0      C
13     69      9      9      9      A
Type: Heterodimer
Binding TFs: 1by4_B (Zinc finger, C4 type (two domains))
1by4_C (Zinc finger, C4 type (two domains))
Binding Sites: 1by4_E / 1by4_G
1by4_F / 1by4_H
			
Publications: Zhao Q, Chasse S.A, Devarakonda S, Sierk M.L, Ahvazi B, Rastinejad F. Structural basis of RXR-DNA interactions. Journal of molecular biology 296:509-20 (2000). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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