DNA Binding Motif

						

			
Accessions: MA2443.1 (JASPAR 2024)

			
Names: SPL3D
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 13
Consensus: GCGGTAsTACCGC
Weblogo: 
PSSM: P0      A      C      G      T
01  11925  11927  77373   4871      G
02   3895  88365   2651  11185      C
03  11198   3623  82693   8582      G
04   3429   2945  91861   7861      G
05   3013   5279   1378  96426      T
06  98921   1263   1547   4365      A
07    638  37667  67197    594      s
08   3129   1638    644 100685      T
09  99789    683   3461   2163      A
10   1070  99675   2696   2655      C
11   2979  89653   3855   9609      C
12   9722   2269  91501   2604      G
13   4407  72848  15975  12866      C
Binding Sites: MA2443.1.13 / MA2443.1.14 / MA2443.1.15 / MA2443.1.17 / MA2443.1.18 / MA2443.1.19 / MA2443.1.20 / MA2443.1.3 / MA2443.1.4 / MA2443.1.5 / MA2443.1.7 / MA2443.1.8
MA2443.1.1 / MA2443.1.2
MA2443.1.10
MA2443.1.11
MA2443.1.12
MA2443.1.16
MA2443.1.6
MA2443.1.9
			
Publications: Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.