DNA Binding Motif

						

			
Accessions: SOX10_full_4 (HumanTF 1.0)

			
Names: SOX10
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 4; Possible binding to single stranded DNA
Length: 15
Consensus: ATGAATTkCAGTCAT
Weblogo: 
PSSM: P0      A      C      G      T
01   4390     13      5     10      A
02      0      3      0   4390      T
03      5      3   4390      3      G
04   4390      5      3      0      A
05   4390      0      8      0      A
06      0      0      0   4390      T
07      0      3     31   4390      T
08    595    295   4390   1990      k
09      3   4390      0     24      C
10   4390      0      3      0      A
11      0      0   4390     10      G
12      0      0      0   4390      T
13      0   4390      0      3      C
14   4390      0      3      0      A
15      2      0     19   4390      T
Binding TFs: SOX10_full (HMG (high mobility group) box, Domain of unknown function (DUF1898), Sox developmental protein N terminal )
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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