DNA Binding Motif

						

			
Accessions: HOXC11_DBD_1 (HumanTF 1.0)

			
Names: HOXC11
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: monomeric; SELEX cycle: 4
Length: 11
Consensus: rrTCrTwAAaw
Weblogo: 
PSSM: P0      A      C      G      T
01   1604    635   1857   1028      r
02   2418   1073   5124     78      r
03    115    243     50   5124      T
04    488   5124     36    564      C
05   2514     31   5124     39      r
06     12     13      0   5124      T
07   3364     34     19   1760      w
08   5124      8     27    282      A
09   5124    151     87    260      A
10   5124   1033    732   1763      a
11   1658   1074    674   1718      w
Binding TFs: HOXC11_DBD (Homeobox domain)
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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