DNA Binding Motif

						

			
Accessions: PPARD_4 (HT-SELEX2 May2017)

			
Names: PPARD
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 16
Consensus: arrGGTCrTGACCyyt
Weblogo: 
PSSM: P0      A      C      G      T
01    283    129     50    146      a
02    250     74    323     78      r
03    365     33    236     32      r
04     38     93    595     47      G
05     48     70    569     94      G
06     41     70     83    587      T
07     38    596     39     30      C
08    404     16    200     10      r
09     14     19     12    595      T
10     32     23    593     22      G
11    597     21     39      4      A
12     72    572     21     11      C
13     21    604     19     29      C
14     27    229      1    372      y
15     32    281     34    293      y
16     99     59    142    307      t
Binding TFs: PPARD (Zinc finger, C4 type (two domains))
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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