DNA Binding Motif

						

			
Accessions: UP00001A_2 (UniPROBE 20160601)

			
Names: E2F transcription factor 2, E2F-2, E2F2, Transcription factor E2F2
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 17
Consensus: hsywyGGCGCCAaavks
Weblogo: 
PSSM: P0      A      C      G      T
01   0.27   0.28   0.18   0.27      h
02   0.23   0.29   0.29   0.19      s
03   0.18   0.29   0.19   0.34      y
04   0.32   0.06   0.13   0.49      w
05   0.11   0.48   0.01   0.41      y
06   0.15   0.01   0.80   0.03      G
07      0   0.19   0.79   0.01      G
08   0.05   0.94   0.01      0      C
09   0.01      0   0.95   0.04      G
10   0.01   0.87   0.12      0      C
11   0.05   0.78   0.01   0.17      C
12   0.78   0.01   0.11   0.09      A
13   0.61   0.17   0.10   0.12      a
14   0.36   0.21   0.22   0.21      a
15   0.29   0.26   0.28   0.17      v
16   0.16   0.17   0.37   0.29      k
17   0.16   0.28   0.33   0.23      s
Binding TFs: UP00001A (E2F/DP family winged-helix DNA-binding domain)
Binding Sites: ACGCGCGC
AGCGCGCG
AGGCGCGC
ATGGCGCC
ATGGCGCG
CCCGCGCG
CGCGCCAA
CGCGCGCC
CGCGCGCG
CGGCGCCA
GCGCCAAA
GCGCCATA
GCGCGCAC
GCGCGCCA
GCGCGCGC
GGCGCCAA
GGCGCGCA
GGCGCGCC
GGGCGCCA
TGGCGCCA
			
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.