DNA Binding Motif

						

			
Accessions: EEAD0136 (EEADannot 2023-12-22)

			
Names: TGA5_1
Organisms: Arabidopsis thaliana
Libraries: EEADannot 2023-12-22 1
1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed]
Length: 15
Consensus: dwtGmTGACGTCAyh
Weblogo: 
PSSM: P0      A      C      G      T
01    293    112    316    279      d
02    388    153    159    300      w
03    181    184     95    540      t
04     97     85    734     84      G
05    544    373     79      4      m
06      1      0      0    999      T
07      0      0    875    125      G
08    997      0      3      0      A
09      0    893      3    104      C
10     44      3    950      3      G
11      2      2      0    996      T
12     63    891     40      6      C
13    931      0     61      8      A
14     42    408    153    397      y
15    274    287    122    317      h
Binding TFs: TGA5 (bZIP transcription factor, Basic region leucine zipper, Seed dormancy control)
			
Publications: Li M, Yao T, Lin W, Hinckley WE, Galli M, Muchero W, Gallavotti A, Chen JG, Huang SC. Double DAP-seq uncovered synergistic DNA binding of interacting bZIP transcription factors. Nat Commun 14:2600 (2023). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.