DNA Binding Motif

						

			
Accessions: 1le9_AB (3D-footprint 20231221)

			
Names: NUCLEAR FACTOR NF-KAPPA-B P65 SUBUNIT
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of a NF-kB heterodimer bound to the Ig/HIV-kB siti
Length: 10
Consensus: aGGAaaGTCC
Weblogo: 
PSSM: P0      A      C      G      T
01     51     14     19     12      a
02      0      0     96      0      G
03      0      0     96      0      G
04     96      0      0      0      A
05     57     15     12     12      a
06     44     19     21     12      a
07      0      0     96      0      G
08      0      0      0     96      T
09      0     96      0      0      C
10      0     96      0      0      C
Type: Heterodimer
Binding TFs: 1le9_A (Rel homology domain (RHD))
1le9_B (Rel homology domain (RHD))
Binding Sites: 1le9_C
1le9_D
			
Publications: Berkowitz B, Huang D.B, Chen-Park F.E, Sigler P.B, Ghosh G. The x-ray crystal structure of the NF-kappa B p50.p65 heterodimer bound to the interferon beta -kappa B site. The Journal of biological chemistry 277:24694-700 (2002). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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