DNA Binding Motif

						

			
Accessions: MA1857.1 (JASPAR 2024)

			
Names: Fli-Erg-c
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 20
Consensus: ammamwwCCGGAAryraaaw
Weblogo: 
PSSM: P0      A      C      G      T
01    279    243    235    242      a
02    265    252    241    242      m
03    269    257    232    242      m
04    287    242    242    229      a
05    274    260    219    246      m
06    297    212    204    286      w
07    372    151    206    271      w
08    103    755    100     43      C
09    108    839     33     20      C
10     17     17    948     19      G
11     24     22    931     23      G
12    898     28     26     48      A
13    831     39     28    103      A
14    370    162    328    139      r
15    188    268    178    365      y
16    275    232    278    215      r
17    294    248    246    212      a
18    284    244    239    233      a
19    277    237    239    247      a
20    268    245    227    260      w
Type: Heterodimer
Binding TFs: Q4H3K2 (Ets-domain, Sterile alpha motif (SAM)/Pointed domain)
Q4H3K2
			
Publications: Khoueiry P, Rothbächer U, Ohtsuka Y, Daian F, Frangulian E, Roure A, Dubchak I, Lemaire P. A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr Biol 20:792-802 (2010). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.