DNA Binding Motif
| Accessions: | UN0338.1 (JASPAR 2024), MA1729.1 (JASPAR 2024) |
| Names: | ZNF680 |
| Organisms: | Homo sapiens |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ChIP-seq |
| Length: | 15 |
| Consensus: | rwCCAAGAAGAATda |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 1457 303 3629 377 r 02 1789 1063 1096 1818 w 03 418 4870 133 345 C 04 1120 4324 69 253 C 05 5394 60 208 104 A 06 4522 17 1116 111 A 07 43 14 5691 18 G 08 5681 23 44 18 A 09 5479 13 203 71 A 10 494 40 5144 88 G 11 5661 41 39 25 A 12 4020 808 163 775 A 13 202 396 213 4955 T 14 1579 770 1870 1547 d 15 3646 469 455 1196 a |
| Type: | Heterodimer |
| Binding TFs: | Q8NEM1 (Zinc finger, C2H2 type, KRAB box, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger) Q8NEM1 |
| Binding Sites: | UN0338.1.1 MA1729.1.6 / UN0338.1.10 MA1729.1.7 / UN0338.1.11 MA1729.1.8 / UN0338.1.12 MA1729.1.9 / UN0338.1.13 MA1729.1.10 / UN0338.1.14 UN0338.1.15 UN0338.1.16 MA1729.1.11 / UN0338.1.17 MA1729.1.12 / UN0338.1.18 UN0338.1.19 UN0338.1.2 UN0338.1.20 MA1729.1.1 / UN0338.1.3 UN0338.1.4 MA1729.1.3 / UN0338.1.5 MA1729.1.4 / UN0338.1.6 UN0338.1.7 UN0338.1.8 MA1729.1.5 / UN0338.1.9 MA1729.1.13 MA1729.1.14 MA1729.1.15 MA1729.1.16 MA1729.1.17 MA1729.1.18 MA1729.1.19 MA1729.1.2 MA1729.1.20 |
| Publications: | Schmitges FW, Radovani E, Najafabadi HS, Barazandeh M, Campitelli LF, Yin Y, Jolma A, Zhong G, Guo H, Kanagalingam T, Dai WF, Taipale J, Emili A, Greenblatt JF, Hughes TR. Multiparameter functional diversity of human C2H2 zinc finger proteins. Genome Res 26:1742-1752 (2016). [Pubmed] |
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