DNA Binding Motif

						

			
Accessions: 1rio_H (3D-footprint 20231221)

			
Names: sigma factor SigA
Organisms: Thermus aquaticus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of bacteriophage lambda cI-NTD in complex with sigma-region4 of Thermus aquaticus bound to DNA
Length: 7
Consensus: cTTGACa
Weblogo: 
PSSM: P0      A      C      G      T
01     16     54     13     13      c
02      0      0      0     96      T
03      0      0      0     96      T
04      0      0     96      0      G
05     96      0      0      0      A
06      0     96      0      0      C
07     54     13     13     16      a
Binding TFs: 1rio_H (Sigma-70, region 4)
Binding Sites: 1rio_T
1rio_U
			
Publications: Jain D, Nickels B.E, Sun L, Hochschild A, Darst S.A. Structure of a ternary transcription activation complex. Molecular cell 13:45-53 (2004). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.