DNA Binding Motif

						

			
Accessions: CTCF_MOUSE.H10MO.A|M01046 (HOCOMOCO 10)

			
Names: Ctcf
Organisms: Mus musculus
Libraries: HOCOMOCO 10 1
1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]
Notes: More than 3 adjacent zinc finger factors{2.3.3}; CTCF-like factors{2.3.3.50}
Length: 20
Consensus: yggCCasyAGrGGGCRsyvk
Weblogo: 
PSSM: P0      A      C      G      T
01     50    202     46    202      y
02     63     87    261     89      g
03    115     38    288     59      g
04     25    429     27     19      C
05      4    487      6      3      C
06    333     11    114     42      a
07     13    296    187      4      s
08     73    249     35    143      y
09    453     20     17     10      A
10      1      0    498      1      G
11    158      2    339      1      r
12     22     17    343    118      G
13      0      3    494      3      G
14     18     13    444     25      G
15     33    440      1     26      C
16    146      3    346      5      R
17     34    311    130     25      s
18     60    186     64    190      y
19    154    146    174     26      v
20     59    116    175    150      k
Binding TFs: CTCF_MOUSE (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
			
Publications: Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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