DNA Binding Motif

						

			
Accessions: MA1791.1 (JASPAR 2024)

			
Names: NAC087
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 19
Consensus: TwaCkTGtkyyaCAMGywA
Weblogo: 
PSSM: P0      A      C      G      T
01 34.783      0      0    965      T
02    250 15.652    127    607      w
03    374    143    245    238      a
04  3.478    997      0      0      C
05      0      0    330    670      k
06  8.696  1.739      0    990      T
07    130    158    694 17.391      G
08    172    136 38.261    654      t
09    231    195    250    323      k
10    240    315    163    282      y
11    207    308    165    320      y
12    567     40    195    198      a
13      0    777 10.435    212      C
14   1000      0      0      0      A
15    278    722      0      0      M
16      0      0 980.87  19.13      G
17 76.522    283    103    537      y
18    398    176  8.696    417      w
19    847  1.739  3.478    148      A
Type: Heterodimer
Binding TFs: Q9FK44 (No apical meristem (NAM) protein)
Q9FK44
			
Publications: Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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