DNA Binding Motif

						

			
Accessions: 4z5d_B (3D-footprint 20231221)

			
Names: Antitoxin HipB
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: HipB-O4 21mer complex
Length: 5
Consensus: tAtCC
Weblogo: 
PSSM: P0      A      C      G      T
01     13     16     13     54      t
02     96      0      0      0      A
03     13     16     13     54      t
04      0     96      0      0      C
05      0     96      0      0      C
Binding TFs: 4z5d_B (Helix-turn-helix, Helix-turn-helix domain, Cro/C1-type HTH DNA-binding domain, Helix-turn-helix domain, Helix-turn-helix domain)
Binding Sites: 4z5d_C
4z5d_D
			
	
			


			

				

				
				
				
				

			

			

		

	
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