DNA Binding Motif

Accessions: 4z5d_B (3D-footprint 20231221)
Names: Antitoxin HipB
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: HipB-O4 21mer complex
Length: 5
Consensus: tAtCC
Weblogo:
PSSM: P0 A C G T
01 13 16 13 54 t
02 96 0 0 0 A
03 13 16 13 54 t
04 0 96 0 0 C
05 0 96 0 0 C
Binding TFs: 4z5d_B (Helix-turn-helix, Helix-turn-helix domain, Cro/C1-type HTH DNA-binding domain, Helix-turn-helix domain, Helix-turn-helix domain)
Binding Sites: 4z5d_C
4z5d_D

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