DNA Binding Motif

						

			
Accessions: 4g92_A (3D-footprint 20231221)

			
Names: HAPB protein
Organisms: Emericella nidulans
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CCAAT-binding complex from Aspergillus nidulans with DNA
Length: 12
Consensus: CCAATCannnnT
Weblogo: 
PSSM: P0      A      C      G      T
01      0     84      6      6      C
02      0     96      0      0      C
03     96      0      0      0      A
04     90      0      0      6      A
05      0      0      6     90      T
06      6     84      0      6      C
07     60     12     18      6      a
08     24     24     24     24      n
09     24     24     24     24      n
10     24     24     24     24      n
11     24     24     24     24      n
12     18      6      6     66      T
Binding TFs: 4g92_A (CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B)
Binding Sites: 4g92_D
4g92_E
			
Publications: Huber E.M, Scharf D.H, Hortschansky P, Groll M, Brakhage A.A. DNA minor groove sensing and widening by the CCAAT-binding complex. Structure (London, England : 1993) 20:1757-68 (2012). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.