DNA Binding Motif

						

			
Accessions: 6y42_B (3D-footprint 20231221)

			
Names: Rrf2 family transcriptional regulator
Organisms: strain ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745, Streptomyces venezuelae
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal Structure of RsrR complexed to a 39 basepair DNA fragment of the rsrR promoter
Length: 8
Consensus: CTCGGACA
Weblogo: 
PSSM: P0      A      C      G      T
01      7     75      7      7      C
02      9      7      7     73      T
03      7     73      9      7      C
04      0      0     96      0      G
05      0      0     96      0      G
06     96      0      0      0      A
07      0     96      0      0      C
08     75      7      7      7      A
Binding TFs: 6y42_B (Transcriptional regulator, Winged helix-turn-helix transcription repressor, HrcA DNA-binding)
Binding Sites: 6y42_E
6y42_F
			
Publications: Crack JC, Amara P, Volbeda A, Mouesca JM, Rohac R, Pellicer Martinez MT, Huang CY, Gigarel O, Rinaldi C, Le Brun NE, Fontecilla-Camps JC. Electron and Proton Transfers Modulate DNA Binding by the Transcription Regulator RsrR. J Am Chem Soc 142:5104-5116 (2020). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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