DNA Binding Motif

						

			
Accessions: 1cgp_B (3D-footprint 20231221)

			
Names: PROTEIN (CATABOLITE GENE ACTIVATOR PROTEIN (CAP))
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CATABOLITE GENE ACTIVATOR PROTEIN (CAP)/DNA COMPLEX + ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
Length: 6
Consensus: TgTgAc
Weblogo: 
PSSM: P0      A      C      G      T
01      2      1      1     92      T
02     10     13     63     10      g
03      9      9     11     67      T
04     12     12     60     12      g
05     85      3      5      3      A
06     18     42     18     18      c
Binding TFs: 1cgp_B (Cyclic nucleotide-binding domain, Bacterial regulatory proteins, crp family, Crp-like helix-turn-helix domain)
Binding Sites: 1cgp_E
1cgp_C
1cgp_F
			
Publications: Schultz SC., Shields GC., Steitz TA. Crystal structure of a CAP-DNA complex: the DNA is bent by 90 degrees. Science. 253(5023):1001-7 (1991). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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