DNA Binding Motif

						

			
Accessions: MA1916.1 (JASPAR 2024)

			
Names: SoxB2
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 20
Consensus: wwwwkyyATTGTTttytttw
Weblogo: 
PSSM: P0      A      C      G      T
01    350    173    200    277      w
02    356    149    220    275      w
03    339    160    232    268      w
04    276    183    242    299      w
05    246    209    269    276      k
06    121    402    226    251      y
07    186    374     64    376      y
08    874      7     20    100      A
09     16      8      9    968      T
10     19      7     19    955      T
11     48     23    919     10      G
12     22     18     14    946      T
13    101    103    102    694      T
14    233    240    147    379      t
15    230    206    190    374      t
16    239    251    214    297      y
17    245    239    209    306      t
18    242    230    197    331      t
19    245    232    180    343      t
20    254    222    167    358      w
Type: Heterodimer
Binding TFs: Q4H2S2 (HMG (high mobility group) box, Domain of unknown function (DUF1898))
Q4H2S2
			
Publications: Chen WC, Pauls S, Bacha J, Elgar G, Loose M, Shimeld SM. Dissection of a Ciona regulatory element reveals complexity of cross-species enhancer activity. Dev Biol 390:261-72 (2014). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.