DNA Binding Motif

						

			
Accessions: M0650 (AthalianaCistrome v4_May2016), MA1663.1 (JASPAR 2024)

			
Names: ANAC050.DAP, T16585;, ANAC050, NAC050
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1, JASPAR 2024 2
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 16
Consensus: CTTGyrwhrCAMGtwA
Weblogo: 
PSSM: P0      A      C      G      T
01      0    599      0      0      C
02      0      0     68    531      T
03      0      0      0    599      T
04      6      8    585      0      G
05     80    178     93    248      y
06    179     87    231    102      r
07    189    122     86    202      w
08    175    194     50    180      h
09    295     58    184     62      r
10      1    526     28     44      C
11    599      0      0      0      A
12    441    158      0      0      M
13      0      0    599      0      G
14     60    106     98    335      t
15    255    128      0    216      w
16    544      0      0     55      A
Type: Heterodimer
Binding TFs: Q9SQX9 (No apical meristem (NAM) protein)
T16585 (No apical meristem (NAM) protein)
Q9SQX9
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]


Zhang S, Zhou B, Kang Y, Cui X, Liu A, Deleris A, Greenberg MV, Cui X, Qiu Q, Lu F, Wohlschlegel JA, Jacobsen SE, Cao X. C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association. Cell Discov : (2015;1.). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.