DNA Binding Motif

						

			
Accessions: SOX17 (HumanTF2 1.0)

			
Names: SOX17
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: HT-SELEX; HT-SELEX generated reference PWM
Length: 10
Consensus: accgAACAAY
Weblogo: 
PSSM: P0      A      C      G      T
01    201     52     35      8      a
02     81    201     40     74      c
03     30    201     70     43      c
04     40     32    201     60      g
05    201     25     13     25      A
06    201      0      0      9      A
07      0    201      0      0      C
08    201      1      0      0      A
09    201     10     60      8      A
10      0     67      0    201      Y
Binding TFs: SOX17_TF2 (HMG (high mobility group) box, Domain of unknown function (DUF1898))
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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