DNA Binding Motif

						

			
Accessions: HNF4A_MOUSE.H10MO.A|M01147 (HOCOMOCO 10)

			
Names: Hnf4a
Organisms: Mus musculus
Libraries: HOCOMOCO 10 1
1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]
Notes: RXR-related receptors (NR2){2.1.3}; HNF-4 (NR2A){2.1.3.2}
Length: 13
Consensus: rGkbCAAAGkyCA
Weblogo: 
PSSM: P0      A      C      G      T
01    773    127    753    208      r
02    121     54   1562    124      G
03    365    112    852    532      k
04    191    682    505    483      b
05    110   1572     46    133      C
06   1706     35     31     89      A
07   1418     45    380     18      A
08   1538      4    294     25      A
09     14     23   1788     36      G
10    130     45    655   1031      k
11     91    841    202    727      y
12     83   1585     44    149      C
13   1366    116    197    182      A
Binding TFs: HNF4A_MOUSE (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains))
			
Publications: Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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