DNA Binding Motif

						

			
Accessions: 1per_L (3D-footprint 20231221)

			
Names: PROTEIN (434 REPRESSOR)
Organisms: Phage 434
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: THE COMPLEX BETWEEN PHAGE 434 REPRESSION DNA-BINDING DOMAIN AND OPERATOR SITE OR3: STRUCTURAL DIFFERENCES BETWEEN CONSENSUS AND NON-CONSENSUS HALF-SITES
Length: 5
Consensus: tACaA
Weblogo: 
PSSM: P0      A      C      G      T
01     16     16     16     48      t
02     96      0      0      0      A
03      0     96      0      0      C
04     64      0     16     16      a
05     96      0      0      0      A
Binding TFs: 1per_L (Helix-turn-helix, Helix-turn-helix domain, Helix-turn-helix domain)
Binding Sites: 1per_A
1per_B
			
Publications: Rodgers D.W, Harrison S.C. The complex between phage 434 repressor DNA-binding domain and operator site OR3: structural differences between consensus and non-consensus half-sites. Structure (London, England : 1993) 1:227-40 (1993). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.