DNA Binding Motif

						

			
Accessions: Sox1_DBD_3 (HumanTF 1.0)

			
Names: Sox1
Organisms: Mus musculus
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 4; Possible binding to single stranded DNA
Length: 13
Consensus: TCAATwmCATTGA
Weblogo: 
PSSM: P0      A      C      G      T
01     87      0      0   1493      T
02      0   1493      0      9      C
03   1493      0      0      0      A
04   1493    170      0      0      A
05     13      0      0   1493      T
06   1006      9    292    487      w
07    476    452    295    270      m
08      6   1493      0     38      C
09   1493      0      0      0      A
10      0      0     33   1493      T
11      0     13      0   1493      T
12     23     14   1493      0      G
13   1493    121     54    132      A
Binding TFs: Sox1_DBD (HMG (high mobility group) box, Domain of unknown function (DUF1898), SOX transcription factor)
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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