DNA Binding Motif

						

			
Accessions: 5e3m_AB (3D-footprint 20231221)

			
Names: DNA-binding protein Fis
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of Fis bound to 27bp DNA F35 (AAATTAGTTTGAATCTCGAGCTAATTT)
Length: 17
Consensus: AGCnCGnnnnnCAnACT
Weblogo: 
PSSM: P0      A      C      G      T
01     84      3      3      6      A
02      0      0     96      0      G
03      3     84      3      6      C
04     24     24     24     24      n
05      3     84      3      6      C
06      3      3     87      3      G
07     24     24     24     24      n
08     24     24     24     24      n
09     24     24     24     24      n
10     24     24     24     24      n
11     24     24     24     24      n
12      3     87      3      3      C
13     87      3      3      3      A
14     24     24     24     24      n
15     87      3      3      3      A
16      0     96      0      0      C
17      3      3      6     84      T
Type: Heterodimer
Binding TFs: 5e3m_A (Bacterial regulatory protein, Fis family)
5e3m_B (Bacterial regulatory protein, Fis family)
Binding Sites: 5e3m_C
5e3m_D
			
Publications: Hancock SP, Stella S, Cascio D, Johnson RC. DNA Sequence Determinants Controlling Affinity, Stability and Shape of DNA Complexes Bound by the Nucleoid Protein Fis. PLoS One : (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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