DNA Binding Motif

						

			
Accessions: RARG_DBD_3 (HumanTF 1.0)

			
Names: RARG
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 3
Length: 17
Consensus: rRGGTCAmcarAGGTCA
Weblogo: 
PSSM: P0      A      C      G      T
01   3505    464   2914    589      r
02   5660     86   1988      3      R
03      4      4   6254      4      G
04      0      5   6039    353      G
05     32     51     34   7345      T
06     33  10998     10     27      C
07   8789     12     75      3      A
08   2523   3276    918   1698      m
09   1532   2980   1793   1646      c
10   3959   1380   1287   1405      a
11   3041    374   3504    237      r
12   6064    126   1779      6      A
13      5      1   6251     10      G
14      0      4   5445    984      G
15     35     42     67   7167      T
16     49  10855     71    136      C
17   9348     98     98     14      A
Binding TFs: RARG_DBD (Zinc finger, C4 type (two domains))
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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