DNA Binding Motif

						

			
Accessions: NKX3-1_methyl_2 (HT-SELEX2 May2017)

			
Names: NKX3-1
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 8
Consensus: stcgTTAa
Weblogo: 
PSSM: P0      A      C      G      T
01   1981   4118   2429    499      s
02   2807    938   2097   9026      t
03   1466   9026   3129   1244      c
04   2685   1658   9026      0      g
05    345    788    335   9026      T
06   1841    373    386   9026      T
07   9026     31    889      0      A
08   3853   1290   1744   2139      a
Binding TFs: NKX3-1 (Homeobox domain)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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