DNA Binding Motif

						

			
Accessions: 1aay_A (3D-footprint 20231221)

			
Names: PROTEIN (ZIF268 ZINC FINGER PEPTIDE)
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: ZIF268 ZINC FINGER-DNA COMPLEX
Length: 10
Consensus: aCGCCCaCGC
Weblogo: 
PSSM: P0      A      C      G      T
01     54     13     16     13      a
02      0     96      0      0      C
03      0      0     96      0      G
04      0     96      0      0      C
05      0     96      0      0      C
06      0     96      0      0      C
07     54     13     16     13      a
08      0     96      0      0      C
09      0      0     96      0      G
10      0     96      0      0      C
Binding TFs: 1aay_A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Sites: 1aay_B
1aay_C
			
Publications: Elrod-Erickson M, Rould M.A, Nekludova L, Pabo C.O. Zif268 protein-DNA complex refined at 1.6 A: a model system for understanding zinc finger-DNA interactions. Structure (London, England : 1993) 4:1171-80 (1996). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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