DNA Binding Motif

						

			
Accessions: M0291 (AthalianaCistrome v4_May2016)

			
Names: T13860;, ZML1.ampDAP
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 21
Consensus: wtmAATCtyrrCCGTysrwTy
Weblogo: 
PSSM: P0      A      C      G      T
01    232     51     85    180      w
02     92    101     94    261      t
03    170    139    123    116      m
04    381     51     97     19      A
05    448     12      5     83      A
06      5     45      7    491      T
07     65    435     18     30      C
08     67     73     44    364      t
09     28    276    101    143      y
10    308     58    174      8      r
11    293      2    213     40      r
12      5    540      2      1      C
13     23    521      1      3      C
14      4      2    510     32      G
15      3     25      7    513      T
16     40    192      2    314      y
17     41    211    260     36      s
18    249     28    266      5      r
19    307      1      5    235      w
20     29     47     23    449      T
21     53    200     37    258      y
Binding TFs: T13860 (GATA zinc finger, tify domain, CCT motif, Divergent CCT motif)
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.